PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 325146
Common NameARALYDRAFT_325146
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 205aa    MW: 22622.1 Da    PI: 7.1095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
325146genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152749123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ykC++C++ F     L  H++ H
   325146 27 YKCKYCPRKFDKTQALGGHQNAH 49
             9***************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-62455No hitNo description
PROSITE profilePS5015711.4682754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLSSDSNYAS DISDNASATG SIENPMYKCK YCPRKFDKTQ ALGGHQNAHK KERGVKKQHE  60
AFLAHLNQPK PDLYLYSYLH PHSFPNQYAL SPGFEQRRYK VDRIDNMSMV YNQYMGSSSS  120
GFLGLRSDPS QRMDRGSTFN GISSQTQPQP QPLSSASSPV CLDLCLGVGS SQTQPQPEEP  180
NDATEEMDAK KENDGSSLSL SLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871138.11e-151zinc finger family protein
TrEMBLD7LYA91e-151D7LYA9_ARALL; Zinc finger family protein
STRINGfgenesh1_pm.C_scaffold_60003661e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.12e-96C2H2 family protein